這麼專門的軟體...試著把中文翻英文搜尋:
Google: Jmol interactive script amino acids coloring
http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/jsmol/scripting/molmast.htm
https://chemapps.stolaf.edu/jmol/docs/
http://jmol.sourceforge.net/jscolors/
http://www.biorom.uma.es/contenido/biomodel/Jmol/colors/jmol_colors.en.htm
...
盡力了.